PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.378470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 220aa    MW: 24042 Da    PI: 6.9757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.378470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-184595155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr++  +g+Wv+eIr+p+    +  r++lg+f tae+Aa a++ a+++l+g
  Cucsa.378470.1 45 PVYRGVRRRN-TGKWVSEIREPR----KpNRIWLGTFPTAEMAAVAYDVAALALKG 95
                    68*****887.9*********94....478***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-114595IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2146105IPR016177DNA-binding domain
SMARTSM003801.8E-3346109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3046105IPR001471AP2/ERF domain
PROSITE profilePS5103223.03746103IPR001471AP2/ERF domain
PRINTSPR003671.4E-84758IPR001471AP2/ERF domain
CDDcd000181.20E-3047105No hitNo description
PRINTSPR003671.4E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
FRSFPTGLHS LPLPFTHFPI SINAFPSLHH LLHSPFMASS SGRHPVYRGV RRRNTGKWVS  60
EIREPRKPNR IWLGTFPTAE MAAVAYDVAA LALKGQDAEL NFPNSASSLP IPASRSPSDI  120
QAAAASAAAA LGAAAAAMEA RNNISSRRGS HSEDVMYGAR YGQEYELGNQ FMDEDLIFDM  180
PNVLMNMAEG MLLSPPRFNN HGGDDNRDFG TDQNLWNFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-1440108168ATERF1
2gcc_A1e-1440108168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138009.11e-132PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR01e-58ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0A0LBA21e-132A0A0A0LBA2_CUCSA; Uncharacterized protein
STRINGVIT_08s0007g03810.t011e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-46ERF family protein